3PL Billing and Invoicing Software
Shipium’s 3PL automated invoice solution ties every charge, markup, and surcharge on a client invoice to what actually shipped, without manual matching against a rate sheet.

One system for third-party logistics billing and invoicing
Every client invoice depends on carrier statements, client rates, shipment data, and the rules governing each account. Shipium’s 3PL billing software brings these inputs into one system, so every charge traces back to the same execution record instead of scattered sources.
Automated invoice ingestion
Shipium pulls carrier bills by API, EDI, SFTP, or file transfer, standardizes them into a single feed, and validates the document against pre-shipment information at the line-item level.
Per-client sell rate sheets
Your team builds a custom sell rate sheet for each client inside the platform, with flat or percentage markups by base rate, zone, or weight, so every account is billed at its agreed rates.
Billing-discrepancy detection
Shipium analyzes invoice discrepancies by carrier, service method, and origin, so your team can see where billing errors come from and put a strategy in place to reduce them.
Per-tenant rules
Shipium applies a separate set of carrier, service method, and account logic to each client, so operations isn’t switching configurations every time a different account’s order comes through.
Margin grows, accuracy holds

Faster invoicing cycles, tighter cost control
Shipium generates client invoices from live execution data. Cash arrives sooner, and every client is charged the right amount on the first pass.
Fewer billing errors
Each carrier line is matched to its original rate. A fee added after fulfillment gets caught before a client ever sees it.

Protected margin, shipment by shipment
Shipium selects the carrier and service for each shipment at the lowest cost that still meets the delivery date, so more of every client’s sell rate stays as margin.

Faster cash flow
Shipium turns shipment records straight into invoices. Your team bills on schedule, and slow manual matching stops holding up collections.

Better pricing decisions
Shipium models how a transportation partner switch or rate change affects shipping costs before you commit, so 3PL billing rests on a tested figure.





Frequently asked questions
What is 3PL billing software?
3PL billing software is the system a logistics provider uses to price, invoice, and reconcile the shipping services it performs for each client. The platform tracks every billable event, applies the client’s contracted markups, matches carrier charges to what was quoted, and produces the statement.
What makes 3PL billing management different from ordinary invoicing software is the multi-client layer: a 3PL bills dozens or hundreds of accounts out of the same pool of carrier charges. The platform has to attribute each shipment to the correct account and apply the specific contract terms.
Shipium’s 3PL billing software attributes each carrier invoice to the correct client account and prices it against that client’s sell rate sheet, so every line on the client invoice matches the shipment it came from.
Learn how to choose the best 3PL software.
What should you look for in courier invoice software?
When looking for courier invoice software, choose a system that cross-checks carrier bills against the fee charged at shipping. A rate card maintained by hand falls out of date, and overcharges go unnoticed, while an integrated shipping platform holds the rate, label, and scan record that explains every line.
Weigh how the courier billing software handles scale and disputes, not just whether it can ingest an invoice. Check if it covers multi-carrier shipping without a manual workaround, how quickly it flags a discrepancy after an invoice arrives, and whether it hands you the documentation needed to dispute a charge.
Keeping verification, invoicing, and reporting in one system also removes the exports between tools that never fully agree. Shipium runs all three on one system, and your team adjusts rules from the Platform Console.
What does a 3PL automated invoice solution actually automate?
A 3PL automated invoice solution automates the manual steps between a shipment leaving the dock and the client invoice going out. Carrier invoice ingestion, per-line rate matching, markup and surcharge application, statement generation, and margin reporting are each run by 3PL automation without a person keying data. Shipium, for example, applies each client’s logic and markups and cuts the bill on the schedule a provider sets.
Learn more about invoice automation for logistics with our guide.
How does 3PL billing software stay accurate when carrier rates change mid-quarter?
3PL billing software stays accurate through mid-quarter carrier rate changes by cross-referencing each line at ship time. Carriers add and adjust fees throughout the year, often outside their published general cost increases. A pricing table that updates only monthly or quarterly falls behind. Shipium runs this check on the same data it uses for rating, so a peak-season surcharge or a fuel adjustment is reflected in the execution rate automatically.